HCA Data Portal


Information about the protocol.

View JSON source: protocoldoneShow required fields only


Protocol>Protocol type (process_type_ontology object) The type of protocol. For example "sample enrichment".
Process type ontology IDprotocol.type.ontologycopy (string from process_type_ontology) An ontology term identifier in the form prefix:accession. For example "EFO:0009128" or "EFO:0009121".Graph restriction: Subclasses of EFO:0002694 from obo:efo.
Process type ontology labelprotocol.type.ontology_labelcopy (string from process_type_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "enzymatic dissociation" or "blood draw".
Process typeRequiredprotocol.type.textcopy (string from process_type_ontology) The name of a process type being used. For example "enzymatic dissociation" or "blood draw".
Protocol>Protocol coreRequired (protocol_core object) Core protocol-level information.
Document filenameprotocol.protocol_core.documentcopy (string from protocol_core) A filename of a PDF document containing the details of the protocol. For example "my_cool_protocol.pdf".
Protocol descriptionprotocol.protocol_core.protocol_descriptioncopy (string from protocol_core) A general description of the protocol.
Protocol IDRequiredprotocol.protocol_core.protocol_idcopy (string from protocol_core) A unique ID for the protocol.
Protocol nameprotocol.protocol_core.protocol_namecopy (string from protocol_core) A short name for the protocol.
protocols.io DOIprotocol.protocol_core.protocols_io_doicopy (string from protocol_core) The protocols.io digital object identifier (doi) for the protocol. For example "10.17504/protocols.io.mgjc3un".
Publication DOIprotocol.protocol_core.publication_doicopy (string from protocol_core) The publication digital object identifier (doi) for the protocol. For example "10.1101/193219".
Protocol>provenance (provenance object) Provenance information provided by the system.
Accessionprotocol.provenance.accessioncopy (string from provenance) A unique accession for this entity, provided by the broker.
Document IDRequiredprotocol.provenance.document_idcopy (string from provenance) Identifier for document.
Schema major versionprotocol.provenance.schema_major_versioncopy (integer from provenance) The major version number of the schema. For example "4" or "10".
Schema minor versionprotocol.provenance.schema_minor_versioncopy (integer from provenance) The minor version number of the schema. For example "6" or "15".
Submission dateRequiredprotocol.provenance.submission_datecopy (string from provenance) When project was first submitted to database.
Submitter IDprotocol.provenance.submitter_idcopy (string from provenance) ID of individual who first submitted project.
Update dateprotocol.provenance.update_datecopy (string from provenance) When project was last updated.
Updater IDprotocol.provenance.updater_idcopy (string from provenance) ID of individual who last updated project.