Project

Data use restrictionRequiredproject.data_use_restriction (string enum) Data use restrictions that apply to the project. Should be one of: "NRES", "GRU" or "GRU-NCU".

dbGaP Study Accession(s)project.dbgap_accessions (array) A list of database of Genotypes and Phenotypes (dbGaP) study accessions. For example "phs001997.v1.p1" or "phs001836".

DUOS IDproject.duos_id (string) A DUOS dataset id. For example "DUOS-000108" or "DUOS-000114".

EGA Study/Dataset Accession(s)project.ega_accessions (array) A list of accessions referring to EGA (European Genome-Phenome Archive) datasets or studies. For example "EGAS00000000001" or "EGAD00000000002".

Estimated cell countproject.estimated_cell_count (integer) An estimated number of cells in this project For example "10000" or "2100000".

GEO series accessionproject.geo_series_accessions (array) A Gene Expression Omnibus (GEO) series accession. For example "GSE00000".

INSDC project accessionproject.insdc_project_accessions (array) An International Nucleotide Sequence Database Collaboration (INSDC) project accession. For example "SRP000000".

INSDC study accessionproject.insdc_study_accessions (array) An International Nucleotide Sequence Database Collaboration (INSDC) study accession. For example "PRJNA000000".

Supplementary link(s)project.supplementary_links (array) External link(s) pointing to code, supplementary data files, or analysis files associated with the project which will not be uploaded. For example "https://github.com/czbiohub/tabula-muris" or "http://celltag.org/".

Project>Contributors (contact array) People contributing to any aspect of the project.

Street addressproject.contributors.address (string from contact) Street address where the individual works. For example "0000 Main Street, Nowheretown, MA, 12091".

Corresponding contributorproject.contributors.corresponding_contributor (boolean from contact) Whether the individual is a primary point of contact for the project. For example "Should be one of: yes, or no.".

Countryproject.contributors.country (string from contact) Country where the individual works. For example "USA".

Email addressproject.contributors.email (string from contact) Email address for the individual. For example "dummy@email.com".

InstituteRequiredproject.contributors.institution (string from contact) Name of primary institute where the individual works. For example "EMBL-EBI" or "University of Washington".

Laboratory/Departmentproject.contributors.laboratory (string from contact) Name of lab or department within the institute where the individual works. For example "Division of Vaccine Discovery" or "Department of Biology".

Contact nameRequiredproject.contributors.name (string from contact) Name of individual who has contributed to the project. For example "John,D,Doe" or "Jane,,Smith".

ORCID IDproject.contributors.orcid_id (string from contact) The individual's ORCID ID linked to previous work. For example "0000-1111-2222-3333".

Phone numberproject.contributors.phone (string from contact) Phone number of the individual or their lab. For example "(+1) 234-555-6789".

Project>Contributors>Project role (contributor_role_ontology object) Primary role of the individual in the project. For example "principal investigator" or "computational scientist".

Contributor role ontology IDproject.contributors.project_role.ontology (string from contributor_role_ontology) An ontology term identifier in the form prefix:accession. For example "EFO:0009736" or "EFO:0009741".Graph restriction: Subclasses of BFO:0000023 from obo:efo.

Contributor role ontology labelproject.contributors.project_role.ontology_label (string from contributor_role_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "principal investigator" or "experimental scientist".

Contributor roleRequiredproject.contributors.project_role.text (string from contributor_role_ontology) The primary role of the contributor in the project. For example "principal investigator" or "experimental scientist".

Project>Funding source(s)Required (funder array) Funding source(s) supporting the project.

Grant IDRequiredproject.funders.grant_id (string from funder) The unique grant identifier or reference. For example "BB/P0000001/1".

Grant titleproject.funders.grant_title (string from funder) The name of the grant funding the project. For example "Study of single cells in the human body.".

Funding organizationRequiredproject.funders.organization (string from funder) The name of the funding organization. For example "Biotechnology and Biological Sciences Research Council (BBSRC)" or "California Institute of Regenerative Medicine (CIRM)".

Project>HCA Bionetwork(s) (hca_bionetwork array) HCA Bionetworks and Atlases the project is associated with

Project Tissue Atlas Statusproject.hca_bionetworks.atlas_project (boolean from hca_bionetwork) A field describing if this project is the HCA Tissue Atlas project which integrates data from other datasets. For example "Yes" or "No".

HCA Tissue Atlasproject.hca_bionetworks.hca_tissue_atlas (string enum from hca_bionetwork) A field describing if the project is part of a HCA Tissue Atlas (e.g. Brain Alzheimer Atlas). Should be one of: "Blood", "Retina", "Lung", "Kidney", "Gut", "Eye" or "Brain".

Official HCA Tissue Atlas Versionproject.hca_bionetworks.hca_tissue_atlas_version (string from hca_bionetwork) A field describing which version of the HCA Tissue Atlas is associated with the project (e.g. v1.0; v2.0) For example "v1.0" or "v2.0".

Official HCA Bionetworkproject.hca_bionetworks.name (string enum from hca_bionetwork) HCA Bionetwork the project is a part of (e.g. Kidney). Should be one of: "Adipose", "Breast", "Development", "Eye", "Genetic Diversity", "Gut", "Heart", "Immune", "Kidney", "Liver", "Lung", "Musculoskeletal", "Nervous System", "Oral & Craniofacial", "Organoid", "Pancreas", "Reproduction" or "Skin".

Project>Publications (publication array) Publications resulting from this project.

AuthorsRequiredproject.publications.authors (array from publication) A list of authors associated with the publication. For example "Doe JD".

Publication DOIproject.publications.doi (string from publication) The publication digital object identifier (doi) of the publication. For example "10.1016/j.cell.2016.07.054".

Official HCA PublicationRequiredproject.publications.official_hca_publication (boolean from publication) Has the publication been accepted as an official HCA publication, according to the process described in https://www.humancellatlas.org/publications/ ? For example "yes" or "no".

Publication PMIDproject.publications.pmid (integer from publication) The PubMed ID of the publication. For example "27565351".

Publication titleRequiredproject.publications.title (string from publication) The title of the publication. For example "Study of single cells in the human body.".

Publication URLproject.publications.url (string from publication) A URL for the publication. For example "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5667944/".

Project>Project coreRequired (project_core object) Core project-level information.

Project descriptionRequiredproject.project_core.project_description (string from project_core) A longer description of the project which includes research goals and experimental approach.

Project labelRequiredproject.project_core.project_short_name (string from project_core) A short name for the project. For example "CoolOrganProject.".

Project titleRequiredproject.project_core.project_title (string from project_core) An official title for the project. For example "Study of single cells in the human body.".

Project>provenance (provenance object) Provenance information provided by the system.

Accessionproject.provenance.accession (string from provenance) A unique accession for this entity, provided by the broker.

Document IDRequiredproject.provenance.document_id (string from provenance) Identifier for document.

Schema major versionproject.provenance.schema_major_version (integer from provenance) The major version number of the schema. For example "4" or "10".

Schema minor versionproject.provenance.schema_minor_version (integer from provenance) The minor version number of the schema. For example "6" or "15".

Submission dateRequiredproject.provenance.submission_date (string from provenance) When project was first submitted to database.

Submitter IDproject.provenance.submitter_id (string from provenance) ID of individual who first submitted project.

Update dateproject.provenance.update_date (string from provenance) When project was last updated.

Updater IDproject.provenance.updater_id (string from provenance) ID of individual who last updated project.