HCA Data Portal

Cell morphology

Information relating to pathological and morphological features of cells.

View JSON source: cell_morphologydoneShow required fields only


Cell morphologycell_morphology.cell_morphologycopy (string) General description of the morphology of cells. For example "adherent cells" or "form single layer colonies".
Cell sizecell_morphology.cell_sizecopy (string) Size of cells in Cell size unit. For example "15" or "20-30".
Cell viability methodcell_morphology.cell_viability_methodcopy (string) The method by which cell viability was determined. For example "Fluorescein diacetate hydrolysis" or "ATP test".
Cell viability resultcell_morphology.cell_viability_resultcopy (string enum) Result of the cell viability test. Should be one of: "pass" or "fail".
Percent cell viabilitycell_morphology.percent_cell_viabilitycopy (number) Percent of cells determined to be viable. For example "98.7".
Percent necrotic cellscell_morphology.percent_necrosiscopy (number) Percent of cells identified to be necrotic. For example "10".
Cell morphology>Cell size unit (length_unit_ontology object) The unit in which the Cell size is expressed.
Length unit ontology IDcell_morphology.cell_size_unit.ontologycopy (string from length_unit_ontology) An ontology term identifier in the form prefix:accession. For example "UO:0000017" or "UO:0000008".Graph restriction: Subclasses of UO:0000001 from obo:efo or obo:uo.
Length unit ontology labelcell_morphology.cell_size_unit.ontology_labelcopy (string from length_unit_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "micrometer" or "meter".
Length unitRequiredcell_morphology.cell_size_unit.textcopy (string from length_unit_ontology) The name of a length unit being used. For example "micrometer" or "meter".

Used by

This module is used by the following properties: