Biomaterial core

Information about any biological material that was generated/used in the project including everything from a whole organism to subcellular components.

Properties

HDBR accessionbiomaterial_core.HDBR_accession (string) A Human Developmental Biology Resource (HDBR) sample accession. For example "34526" or "14758, 2, liver".

Biomaterial descriptionbiomaterial_core.biomaterial_description (string) A general description of the biomaterial.

Biomaterial IDRequiredbiomaterial_core.biomaterial_id (string) A unique ID for the biomaterial.

Biomaterial namebiomaterial_core.biomaterial_name (string) A short, descriptive name for the biomaterial that need not be unique.

BioSamples accessionbiomaterial_core.biosamples_accession (string) A BioSamples accession. For example "SAMN00000000".

Genotypebiomaterial_core.genotype (string) Genotype of the biomaterial. For example "DRB1 0401 protective allele" or "HLA-B*3901 allele".

INSDC sample accessionbiomaterial_core.insdc_sample_accession (string) An International Nucleotide Sequence Database Collaboration (INSDC) sample accession. For example "SRS0000000".

NCBI taxon IDRequiredbiomaterial_core.ncbi_taxon_id (array) A taxonomy ID (taxonID) from NCBI. For example "9606".

Supplementary filesbiomaterial_core.supplementary_files (array) A list of filenames of biomaterial-level supplementary files. For example "sample_site_image.jpg".

Timecourse relevancebiomaterial_core.timecourse.relevance (string from timecourse) Relevance of the Timecourse value/unit to the experiment. For example "Collection after tumor cells injected into the mammary gland" or "Time tissue underwent liberase digestion".

Timecourse valueRequiredbiomaterial_core.timecourse.value (string from timecourse) The numerical value in Timecourse unit associated with a time interval used in the experiment. For example "2" or "5.5-10.5".

Time unit ontology IDbiomaterial_core.timecourse.unit.ontology (string from time_unit_ontology) An ontology term identifier in the form prefix:accession. For example "UO:0000010" or "UO:0000034".Graph restriction: Subclasses of UO:0000003, UO:0000149 from obo:efo or obo:uo.

Time unit ontology labelbiomaterial_core.timecourse.unit.ontology_label (string from time_unit_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "second" or "week".

Time unitRequiredbiomaterial_core.timecourse.unit.text (string from time_unit_ontology) The name of a time unit being used. For example "second" or "week".

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