HCA Data Portal

Biomaterial core

Information about any biological material that was generated/used in the project including everything from a whole organism to subcellular components.

View JSON source: biomaterial_coredoneShow required fields only


HDBR accessionbiomaterial_core.HDBR_accessioncopy (string) A Human Developmental Biology Resource (HDBR) sample accession. For example "34526" or "14758, 2, liver".
Biomaterial descriptionbiomaterial_core.biomaterial_descriptioncopy (string) A general description of the biomaterial.
Biomaterial IDRequiredbiomaterial_core.biomaterial_idcopy (string) A unique ID for the biomaterial.
Biomaterial namebiomaterial_core.biomaterial_namecopy (string) A short, descriptive name for the biomaterial that need not be unique.
BioSamples accessionbiomaterial_core.biosamples_accessioncopy (string) A BioSamples accession. For example "SAMN00000000".
Genotypebiomaterial_core.genotypecopy (string) Genotype of the biomaterial. For example "DRB1 0401 protective allele" or "HLA-B*3901 allele".
INSDC sample accessionbiomaterial_core.insdc_sample_accessioncopy (string) An International Nucleotide Sequence Database Collaboration (INSDC) sample accession. For example "SRS0000000".
NCBI taxon IDRequiredbiomaterial_core.ncbi_taxon_idcopy (array) A taxonomy ID (taxonID) from NCBI. For example "9606".
Supplementary filesbiomaterial_core.supplementary_filescopy (array) A list of filenames of biomaterial-level supplementary files. For example "sample_site_image.jpg".
Biomaterial core>Timecourse (timecourse object) Information relating to a timecourse associated with this biomaterial.
Timecourse relevancebiomaterial_core.timecourse.relevancecopy (string from timecourse) Relevance of the Timecourse value/unit to the experiment. For example "Collection after tumor cells injected into the mammary gland" or "Time tissue underwent liberase digestion".
Timecourse valueRequiredbiomaterial_core.timecourse.valuecopy (string from timecourse) The numerical value in Timecourse unit associated with a time interval used in the experiment. For example "2" or "5.5-10.5".
Biomaterial core>Timecourse>Timecourse unitRequired (time_unit_ontology object) The unit in which the Timecourse value is expressed.
Time unit ontology IDbiomaterial_core.timecourse.unit.ontologycopy (string from time_unit_ontology) An ontology term identifier in the form prefix:accession. For example "UO:0000010" or "UO:0000034".Graph restriction: Subclasses of UO:0000003, UO:0000149 from obo:efo or obo:uo.
Time unit ontology labelbiomaterial_core.timecourse.unit.ontology_labelcopy (string from time_unit_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "second" or "week".
Time unitRequiredbiomaterial_core.timecourse.unit.textcopy (string from time_unit_ontology) The name of a time unit being used. For example "second" or "week".

Used by

This module is used by the following properties: