File core

Information about a file produced from any process.

Properties

Checksumfile_core.checksum (string) MD5 checksum of the file. For example "e09a986c2e630130b1849d4bf9a94c06".

File nameRequiredfile_core.file_name (string) The name of the file. For example "R1.fastq.gz" or "codebook.json".

File sourcefile_core.file_source (string enum) The source of the file. This is typically an organisation, repository, person or dedicated process. Should be one of: "DCP/2 Analysis", "Contributor", "ArrayExpress", "HCA Release", "GEO", "SCEA", "SCP", "DCP/1 Matrix Service", "LungMAP", "Zenodo", "Publication" or "DCP/2 Ingest".

File formatRequiredfile_core.format (string) The format of the file. For example "fastq.gz" or "tif".

Content description ontology IDfile_core.content_description.ontology (string from file_content_ontology) An ontology term identifier in the form prefix:accession. For example "data:3497" or "data:0863".Graph restriction: Subclasses of data:0006, IAO:0000030 from obo:edam or obo:efo.

Content description ontology labelfile_core.content_description.ontology_label (string from file_content_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "DNA sequence (raw)" or "Sequence alignment".

Content descriptionRequiredfile_core.content_description.text (string from file_content_ontology) General description of the contents of the file. For example "DNA sequence (raw)" or "Sequence alignment".

Used by