Analysis file

A file analysis results produced by a secondary analysis pipeline.

Properties

Genome versionRequiredanalysis_file.genome_assembly_version (string enum) Name of the genome assembly used to generate this file. Should be one of: "GRCh38", "GRCh37", "GRCm39", "GRCm38", "GRCm37" or "Not Applicable".

Patch versionanalysis_file.genome_patch_version (string) Patch version of the genome assembly used to generate this file. For example "p11" or "p14".

Matrix cell countanalysis_file.matrix_cell_count (integer) Number of cells analyzed in a matrix file. For example "1" or "2100".

Checksumanalysis_file.file_core.checksum (string from file_core) MD5 checksum of the file. For example "e09a986c2e630130b1849d4bf9a94c06".

File nameRequiredanalysis_file.file_core.file_name (string from file_core) The name of the file. For example "R1.fastq.gz" or "codebook.json".

File sourceanalysis_file.file_core.file_source (string enum from file_core) The source of the file. This is typically an organisation, repository, person or dedicated process. Should be one of: "DCP/2 Analysis", "Contributor", "ArrayExpress", "HCA Release", "GEO", "SCEA", "SCP", "DCP/1 Matrix Service", "LungMAP", "Zenodo", "Publication" or "DCP/2 Ingest".

File formatRequiredanalysis_file.file_core.format (string from file_core) The format of the file. For example "fastq.gz" or "tif".

Content description ontology IDanalysis_file.file_core.content_description.ontology (string from file_content_ontology) An ontology term identifier in the form prefix:accession. For example "data:3497" or "data:0863".Graph restriction: Subclasses of data:0006, IAO:0000030 from obo:edam or obo:efo.

Content description ontology labelanalysis_file.file_core.content_description.ontology_label (string from file_content_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "DNA sequence (raw)" or "Sequence alignment".

Content descriptionRequiredanalysis_file.file_core.content_description.text (string from file_content_ontology) General description of the contents of the file. For example "DNA sequence (raw)" or "Sequence alignment".

Accessionanalysis_file.provenance.accession (string from provenance) A unique accession for this entity, provided by the broker.

Document IDRequiredanalysis_file.provenance.document_id (string from provenance) Identifier for document.

Schema major versionanalysis_file.provenance.schema_major_version (integer from provenance) The major version number of the schema. For example "4" or "10".

Schema minor versionanalysis_file.provenance.schema_minor_version (integer from provenance) The minor version number of the schema. For example "6" or "15".

Submission dateRequiredanalysis_file.provenance.submission_date (string from provenance) When project was first submitted to database.

Submitter IDanalysis_file.provenance.submitter_id (string from provenance) ID of individual who first submitted project.

Update dateanalysis_file.provenance.update_date (string from provenance) When project was last updated.

Updater IDanalysis_file.provenance.updater_id (string from provenance) ID of individual who last updated project.