Collection protocol

Information about the biomaterial collection protocol.

Properties

Process type ontology IDcollection_protocol.method.ontology (string from process_type_ontology) An ontology term identifier in the form prefix:accession. For example "EFO:0009128" or "EFO:0009121".Graph restriction: Subclasses of EFO:0002694 from obo:efo.

Process type ontology labelcollection_protocol.method.ontology_label (string from process_type_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "enzymatic dissociation" or "blood draw".

Process typeRequiredcollection_protocol.method.text (string from process_type_ontology) The name of a process type being used. For example "enzymatic dissociation" or "blood draw".

Catalog numbercollection_protocol.reagents.catalog_number (string from purchased_reagents) The catalog number of the kit/reagent. For example "20014279".

Expiry datecollection_protocol.reagents.expiry_date (string from purchased_reagents) The date of expiration for the kit/reagent. For example "2018-01-31" or "2018-01".

Titercollection_protocol.reagents.kit_titer (string from purchased_reagents) Appropriate titer and volume recommendations found in kit/reagent Certificate of Analysis. For example "3.0x10^7".

Batch/lot numbercollection_protocol.reagents.lot_number (string from purchased_reagents) The batch or lot number of the kit/reagent. For example "10001A".

Manufacturercollection_protocol.reagents.manufacturer (string from purchased_reagents) The manufacturer of the kit/reagent. For example "Illumina" or "ThermoFisher Scientific".

Retail namecollection_protocol.reagents.retail_name (string from purchased_reagents) The retail name of the kit/reagent. For example "SureCell WTA 3' Library Prep Kit" or "CytoTune iPS 2.0 Sendai Reprogramming Kit".

Document filenamecollection_protocol.protocol_core.document (string from protocol_core) A filename of a PDF document containing the details of the protocol. For example "my_cool_protocol.pdf".

Protocol descriptioncollection_protocol.protocol_core.protocol_description (string from protocol_core) A general description of the protocol.

Protocol IDRequiredcollection_protocol.protocol_core.protocol_id (string from protocol_core) A unique ID for the protocol.

Protocol namecollection_protocol.protocol_core.protocol_name (string from protocol_core) A short name for the protocol.

protocols.io DOIcollection_protocol.protocol_core.protocols_io_doi (string from protocol_core) The protocols.io digital object identifier (doi) for the protocol. For example "10.17504/protocols.io.mgjc3un".

Publication DOIcollection_protocol.protocol_core.publication_doi (string from protocol_core) The publication digital object identifier (doi) for the protocol. For example "10.1101/193219".

Accessioncollection_protocol.provenance.accession (string from provenance) A unique accession for this entity, provided by the broker.

Document IDRequiredcollection_protocol.provenance.document_id (string from provenance) Identifier for document.

Schema major versioncollection_protocol.provenance.schema_major_version (integer from provenance) The major version number of the schema. For example "4" or "10".

Schema minor versioncollection_protocol.provenance.schema_minor_version (integer from provenance) The minor version number of the schema. For example "6" or "15".

Submission dateRequiredcollection_protocol.provenance.submission_date (string from provenance) When project was first submitted to database.

Submitter IDcollection_protocol.provenance.submitter_id (string from provenance) ID of individual who first submitted project.

Update datecollection_protocol.provenance.update_date (string from provenance) When project was last updated.

Updater IDcollection_protocol.provenance.updater_id (string from provenance) ID of individual who last updated project.