Probe

Information about probes used to detect targets.

Properties

Channelprobe.channel_label (array) Channel label used to assay signal. For example "1" or "A".

Fluorophoreprobe.fluorophore (array) Fluorophore used to detect target. For example "Cy5" or "Alexa 488".

Probe labelRequiredprobe.probe_label (string) The label of a probe used to detect target in this experiment. For example "ACTA1" or "cFos".

Probe sequenceprobe.probe_sequence (string) Sequence of a probe used to detect target. For example "AGGCTATAGCGGAGCTACG" or "aggctatagcggagctacg".

Target label in codebookprobe.target_codebook_label (string) A label used in the codebook for the target. For example "AKT1" or "CFOS".

Target labelRequiredprobe.target_label (string) An identifier for the target molecule. For example "CHEBI:85345" or "ENSG00000170345".

Target nameprobe.target_name (string) The name of the target molecule. For example "ACTA1_exon1" or "nuclear cFos".

Process type ontology IDprobe.assay_type.ontology (string from process_type_ontology) An ontology term identifier in the form prefix:accession. For example "EFO:0009128" or "EFO:0009121".Graph restriction: Subclasses of EFO:0002694 from obo:efo.

Process type ontology labelprobe.assay_type.ontology_label (string from process_type_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "enzymatic dissociation" or "blood draw".

Process typeRequiredprobe.assay_type.text (string from process_type_ontology) The name of a process type being used. For example "enzymatic dissociation" or "blood draw".

Catalog numberprobe.probe_reagents.catalog_number (string from purchased_reagents) The catalog number of the kit/reagent. For example "20014279".

Expiry dateprobe.probe_reagents.expiry_date (string from purchased_reagents) The date of expiration for the kit/reagent. For example "2018-01-31" or "2018-01".

Titerprobe.probe_reagents.kit_titer (string from purchased_reagents) Appropriate titer and volume recommendations found in kit/reagent Certificate of Analysis. For example "3.0x10^7".

Batch/lot numberprobe.probe_reagents.lot_number (string from purchased_reagents) The batch or lot number of the kit/reagent. For example "10001A".

Manufacturerprobe.probe_reagents.manufacturer (string from purchased_reagents) The manufacturer of the kit/reagent. For example "Illumina" or "ThermoFisher Scientific".

Retail nameprobe.probe_reagents.retail_name (string from purchased_reagents) The retail name of the kit/reagent. For example "SureCell WTA 3' Library Prep Kit" or "CytoTune iPS 2.0 Sendai Reprogramming Kit".

Subcellular structure ontology IDprobe.subcellular_structure.ontology (string from cellular_component_ontology) An ontology term identifier in the form prefix:accession. For example "GO:0005737" or "GO:0005634".Graph restriction: Subclasses of GO:0005575 from obo:hcao or obo:go.

Subcellular structure ontology labelprobe.subcellular_structure.ontology_label (string from cellular_component_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "cytoplasm" or "nucleus".

Subcellular structureRequiredprobe.subcellular_structure.text (string from cellular_component_ontology) The name of a subcellular structure. For example "cytoplasm" or "nucleus".

Used by