Tier 1 Metadata
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| Field | Description |
|---|---|
Description Example Sarah,A,Teichmann Source HCABioNetworks AnnData Location | |
Description | |
Description Allowed Values Example EFO:0008563 Rationale Source HCABioNetworks AnnData Location | |
Description | |
Description Allowed Values Example GRCh38 GRCh37 Rationale Source HCABioNetworks AnnData Location | |
Description Example cell ranger 3.0.1 kallisto bustools GSNAP Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example yes no Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example 3 prime tag full length Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example v110 GCF_000001405.40 Rationale Source HCABioNetworks AnnData Location | |
Description Source HCABioNetworks AnnData Location | |
Description Example https://www.biorxiv.org/conte nt/early/2017/09/24/193219 Rationale Source HCABioNetworks AnnData Location | |
Description Example Cells of the adult human heart collection is "All — Cells of the adult human heart" Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Example none soupx cellbender Source HCABioNetworks AnnData Location | |
Description Example none doublet_finder manual Source HCABioNetworks AnnData Location | |
Description |
| Field | Description |
|---|---|
Description Allowed Values Example CR_donor_1 MM_donor_1 LR_donor_2 Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Allowed Values Example NCBITaxon:9606 NCBITaxon:10090 Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Allowed Values Example 1 2 3 4 0 unknown not applicable Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example PATO:0000383 for female, PATO:0000384 for male Rationale Source CELLxGENE SchemaBioNetworks AnnData Location |
| Field | Description |
|---|---|
Description Example SC24 SC25 SC28 Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example UBERON:0001828 UBERON:0000966 Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Example terminal ileum Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example surgical donor postmortem donor Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example biopsy brush surgical resection Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example tissue organoid cell culture Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Allowed Values Example healthy diseased adjacent Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example MONDO:0005385 PATO:0000461 Rationale Source CELLxGENE SchemaBioNetworks AnnData Location | |
Description Allowed Values Example fresh frozen at -70C Rationale Source HCABioNetworks AnnData Location | |
Description | |
Description Allowed Values Example true false Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example HsapDv:0000237 unknown Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example EPI LP MUSC SUB MLN PP Source HCABioNetworks AnnData Location | |
Description Example trypsin trypLE collagenase Source HCABioNetworks AnnData Location | |
Description Allowed Values Example CL:0000057+ na Rationale Source HCABioNetworks AnnData Location | |
Description Example 2018 Rationale Source HCABioNetworks AnnData Location | |
Description Allowed Values Example AIDA_site_1 AIDA_site_2 Rationale Source HCABioNetworks AnnData Location | |
Description Example sampleX_day1 Rationale Source HCABioNetworks AnnData Location | |
Description Example 5000 4000 Rationale Source HCABioNetworks AnnData Location | |
Description Example 88 95 93.5 Rationale Source HCABioNetworks AnnData Location | |
Description Example EMBL-EBI Genome Institute of Singapore Rationale Source HCABioNetworks AnnData Location | |
Description Example Batch run by different personnel on different days Rationale Source HCABioNetworks AnnData Location |
| Field | Description |
|---|---|
Description Example A24 NK_healthy_001 Rationale Source HCABioNetworks AnnData Location | |
Description Example GSM1684095 Rationale Source HCABioNetworks AnnData Location | |
Description Example batch01 batch02 Rationale Source HCABioNetworks AnnData Location | |
Description Example run1 NV0087 Rationale Source HCABioNetworks AnnData Location |
| Field | Description |
|---|---|
| Field | Description |
|---|---|