| A Partial Picture of the Single-Cell Transcriptomics of Human IgA Nephropathy | Homo sapiens | GEXSCOPE technology | kidney | normal IgA glomerulonephritis | 20,570 |
| A human cell atlas of fetal gene expression. | Homo sapiens | sci-RNA-seq3 | 14 anatomical entities | | 4,062,965 |
| Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects | 3 species | 12 library construction methods | 4 anatomical entities | | 50,556 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. | Homo sapiens | 4 library construction methods | 8 anatomical entities | | 106,792 |
| Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics | Homo sapiens | 2 library construction methods | kidney | | 123,408 |
| Construction of A Human Cell Landscape by Single-cell mRNA-seq | Homo sapiens | Microwell-Seq | 37 anatomical entities | | 702,968 |
| Decoding human fetal liver haematopoiesis | Homo sapiens | 2 library construction methods | 4 anatomical entities | | 223,112 |
| Defining cellular complexity in human autosomal dominant polycystic kidney disease by multimodal single cell analysis | Homo sapiens | 2 library construction methods | kidney | | 150,000 |
| Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts | Homo sapiens | 10x 3' v2 | kidney | | 7,217 |
| Differentiation of Human Intestinal Organoids with Endogenous Vascular Endothelial Cells | Homo sapiens | 2 library construction methods | 3 anatomical entities | | Unspecified |
| Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing | Homo sapiens | STRT-seq | kidney | | 3,000 |
| HCA seed network precise tumor-nephrectomy samples | Homo sapiens | 10x 3' v3 | kidney | | 345,521 |
| Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing To Define Immune Cell Chimerism in the Rejecting Kidney Transplant | Homo sapiens | 2 library construction methods | kidney | | 81,139 |
| Healthy human kidney cell type single cell RNA-seq data | Homo sapiens | 10x 3' v3 | kidney | | 156,624 |
| Intrarenal Single-Cell Sequencing of Hepatitis B Virus Associated Membranous Nephropathy. | Homo sapiens | GEXSCOPE technology | kidney | | 15,614 |
| Joint profiling of chromatin accessibility and gene expression in thousands of single cells | 2 species | 2 library construction methods | 4 anatomical entities | normal lung adenocarcinoma | 16,120 |
| Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. | Homo sapiens | 2 library construction methods | 3 anatomical entities | | 270,000 |
| Mapping the developing human immune system across organs | 2 species | 5 library construction methods | 10 anatomical entities | | 922,332 |
| Mapping the immune environment in clear cell renal carcinoma by single-cell genomics | Homo sapiens | 2 library construction methods | 2 anatomical entities | renal cell carcinoma (disease) | 37,055 |
| Multimodal single cell sequencing of human diabetic kidney disease implicates chromatin accessibility and genetic background in disease progression | Homo sapiens | 3 library construction methods | kidney | | 90,793 |
| Pathogen-induced tissue-resident memory T <sub>H</sub> 17 (T <sub>RM</sub> 17) cells amplify autoimmune kidney disease | Homo sapiens | CITE-seq | 2 anatomical entities | | 32,593 |
| Single Cell RNA-Seq profiling human embryonic kidney cortex cells | Homo sapiens | 10X 3' V2 sequencing | kidney | | 4,000 |
| Single Cell RNA-Seq profiling of human embryonic kidney outer and inner cortical cells and kidney organoid cells | Homo sapiens | 10x 3' v2 | 2 anatomical entities | | Unspecified |
| Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis | Homo sapiens | Fluidigm C1-based library preparation | 3 anatomical entities | normal systemic lupus erythematosus | 899 |
| Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney | Homo sapiens | 2 library construction methods | kidney | | 98,550 |
| Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker. | Homo sapiens | 2 library construction methods | kidney | | 22,268 |
| Single-Cell RNA Sequencing in Multiple Pathologic Types of Renal Cell Carcinoma Revealed Novel Potential Tumor-Specific Markers. | Homo sapiens | 10x 3' v3 | kidney | | 30,263 |
| Single-Cell RNA-Seq Analysis of cells from human urine | Homo sapiens | 10x 3' V3 sequencing | renal system | | Unspecified |
| Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell | Homo sapiens | 3 library construction methods | 3 anatomical entities | | 21,964 |
| Single-Cell Transcriptomics Reveal Immune Mechanisms of the Onset and Progression of IgA Nephropathy | Homo sapiens | STRT-seq | 2 anatomical entities | | 3,620 |
| Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response | Homo sapiens | inDrop | kidney | | 4,000 |
| Single-cell RNA sequencing of human kidney | Homo sapiens | 10x 3' v2 | kidney | | 23,366 |
| Single-cell RNA sequencing of urinary cells reveals distinct cellular diversity in COVID-19-associated AKI | Homo sapiens | 10x 3' V3 | urine | | 30,076 |
| Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response | Homo sapiens | 10x 3' v2 | kidney | | 29,041 |
| Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity | Homo sapiens | 10x 3' v3 | kidney | | 27,677 |
| Single-cell protein activity analysis identifies recurrence-associated renal tumor macrophages. | Homo sapiens | 10x 3' v2 | kidney | clear cell renal carcinoma | 200,000 |
| Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy. | Homo sapiens | 2 library construction methods | 3 anatomical entities | | 167,283 |
| Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors. | Homo sapiens | 10x 3' v2 | 2 anatomical entities | | 72,501 |
| Spatially resolved human kidney multi-omics single cell atlas highlights the key role of the fibrotic microenvironment in kidney disease progression | Homo sapiens | 3 library construction methods | kidney | | 453,782 |
| Spatio-temporal immune zonation of the human kidney | Homo sapiens | 10x 3' v2 | kidney | | 28,785 |
| Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution | Mus musculus | Smart-seq2 | 18 anatomical entities | | 100,605 |
| The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans | Homo sapiens | 3 library construction methods | 24 anatomical entities | | 481,120 |
| The immune cell landscape in kidneys of patients with lupus nephritis. | Homo sapiens | 2 library construction methods | 2 anatomical entities | | 9,200 |
| The single-cell transcriptomic landscape of early human diabetic nephropathy | Homo sapiens | 10x 5' v2 | kidney | | 30,000 |
| Ureter single-cell and spatial mapping reveal cell types, architecture, and signaling networks | Homo sapiens | 2 library construction methods | ureter | | 30,942 |
