An important update for the HCA community: Major changes are coming soon to the HCA DCP. Read the announcement.


Analysis protocol

Information about the analysis protocol.

View JSON source: analysis_protocoldoneShow required fields only


Computational methodRequiredanalysis_protocol.computational_methodfile_copy (string) A URI to a versioned workflow and versioned execution environment in a GA4GH-compliant repository. For example "SmartSeq2SingleCell" or "10x".
Analysis protocol>Protocol typeRequired (process_type_ontology) The type of protocol.
Process type ontology IDanalysis_protocol.type.ontologyfile_copy (string from process_type_ontology) An ontology term identifier in the form prefix:accession. For example "EFO:0009128" or "EFO:0009121".Graph restriction: Subclasses of EFO:0002694 from obo:efo.
Process type ontology labelanalysis_protocol.type.ontology_labelfile_copy (string from process_type_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "enzymatic dissociation" or "blood draw".
Process typeRequiredanalysis_protocol.type.textfile_copy (string from process_type_ontology) The name of a process type being used. For example "enzymatic dissociation" or "blood draw".
Analysis protocol>Protocol coreRequired (protocol_core) Core protocol-level information.
Document filenameanalysis_protocol.protocol_core.documentfile_copy (string from protocol_core) A filename of a PDF document containing the details of the protocol. For example "my_cool_protocol.pdf".
Protocol descriptionanalysis_protocol.protocol_core.protocol_descriptionfile_copy (string from protocol_core) A general description of the protocol.
Protocol IDRequiredanalysis_protocol.protocol_core.protocol_idfile_copy (string from protocol_core) A unique ID for the protocol.
Protocol nameanalysis_protocol.protocol_core.protocol_namefile_copy (string from protocol_core) A short name for the protocol. DOIanalysis_protocol.protocol_core.protocols_io_doifile_copy (string from protocol_core) The digital object identifier (doi) for the protocol. For example "10.17504/".
Publication DOIanalysis_protocol.protocol_core.publication_doifile_copy (string from protocol_core) The publication digital object identifier (doi) for the protocol. For example "10.1101/193219".
Analysis protocol>provenance (provenance) Provenance information provided by the system.
Accessionanalysis_protocol.provenance.accessionfile_copy (string from provenance) A unique accession for this entity, provided by the broker.
Document IDRequiredanalysis_protocol.provenance.document_idfile_copy (string from provenance) Identifier for document.
Schema major versionanalysis_protocol.provenance.schema_major_versionfile_copy (integer from provenance) The major version number of the schema. For example "4" or "10".
Schema minor versionanalysis_protocol.provenance.schema_minor_versionfile_copy (integer from provenance) The minor version number of the schema. For example "6" or "15".
Submission dateRequiredanalysis_protocol.provenance.submission_datefile_copy (string from provenance) When project was first submitted to database.
Submitter IDanalysis_protocol.provenance.submitter_idfile_copy (string from provenance) ID of individual who first submitted project.
Update dateanalysis_protocol.provenance.update_datefile_copy (string from provenance) When project was last updated.
Updater IDanalysis_protocol.provenance.updater_idfile_copy (string from provenance) ID of individual who last updated project.