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Metadata

Analysis file

A file analysis results produced by a secondary analysis pipeline.

View JSON source: analysis_filedoneShow required fields only

Properties

Matrix cell countanalysis_file.matrix_cell_countcopy (integer) Number of cells analyzed in a matrix file. For example "1" or "2100".
Analysis file>File coreRequired (file_core object) Core file-level information.
Checksumanalysis_file.file_core.checksumcopy (string from file_core) MD5 checksum of the file. For example "e09a986c2e630130b1849d4bf9a94c06".
File nameRequiredanalysis_file.file_core.file_namecopy (string from file_core) The name of the file. For example "R1.fastq.gz" or "codebook.json".
File sourceanalysis_file.file_core.file_sourcecopy (string enum from file_core) The source of the file. This is typically an organisation, repository, person or dedicated process. Should be one of: "DCP/2 Analysis", "Contributor", "ArrayExpress", "HCA Release", "GEO", "SCEA", "SCP", "DCP/1 Matrix Service", "LungMAP", "Zenodo" or "Publication".
File formatRequiredanalysis_file.file_core.formatcopy (string from file_core) The format of the file. For example "fastq.gz" or "tif".
Analysis file>File core>Content description (file_content_ontology array) General description of the contents of the file.
Content description ontology IDanalysis_file.file_core.content_description.ontologycopy (string from file_content_ontology) An ontology term identifier in the form prefix:accession. For example "data:3497" or "data:0863".Graph restriction: Subclasses of data:0006 from obo:edam.
Content description ontology labelanalysis_file.file_core.content_description.ontology_labelcopy (string from file_content_ontology) The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. For example "DNA sequence (raw)" or "Sequence alignment".
Content descriptionRequiredanalysis_file.file_core.content_description.textcopy (string from file_content_ontology) General description of the contents of the file. For example "DNA sequence (raw)" or "Sequence alignment".
Analysis file>provenance (provenance object) Provenance information provided by the system.
Accessionanalysis_file.provenance.accessioncopy (string from provenance) A unique accession for this entity, provided by the broker.
Document IDRequiredanalysis_file.provenance.document_idcopy (string from provenance) Identifier for document.
Schema major versionanalysis_file.provenance.schema_major_versioncopy (integer from provenance) The major version number of the schema. For example "4" or "10".
Schema minor versionanalysis_file.provenance.schema_minor_versioncopy (integer from provenance) The minor version number of the schema. For example "6" or "15".
Submission dateRequiredanalysis_file.provenance.submission_datecopy (string from provenance) When project was first submitted to database.
Submitter IDanalysis_file.provenance.submitter_idcopy (string from provenance) ID of individual who first submitted project.
Update dateanalysis_file.provenance.update_datecopy (string from provenance) When project was last updated.
Updater IDanalysis_file.provenance.updater_idcopy (string from provenance) ID of individual who last updated project.