| A cellular census of human lungs identifies novel cell states in health and in asthma | Homo sapiens | 2 library construction methods | 2 anatomical entities | normal chronic obstructive pulmonary disease | 47,291 |
| A molecular cell atlas of the human lung from single-cell RNA sequencing | 2 species | 2 library construction methods | 2 anatomical entities | | 75,000 |
| A Single-Cell Atlas of the Human Healthy Airways | Homo sapiens | 10x 3' v2 | 3 anatomical entities | | 77,969 |
| A spatially resolved atlas of the human lung characterizes a gland-associated immune niche | Homo sapiens | 6 library construction methods | lung | normal type 2 diabetes mellitus | 193,108 |
| Airspace Macrophages and Monocytes Exist in Transcriptionally Distinct Subsets in Healthy Adults | Homo sapiens | 10x 3' v3 | lung | | 49,384 |
| Allergic inflammatory memory in human respiratory epithelial progenitor cells | Homo sapiens | Seq-Well | nose | | 36,740 |
| Barbry_unpubl | -- | 10X 3' v3 | -- | | 100,211 |
| Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. | Homo sapiens | 10x 5' v2 | lung | | 77,146 |
| Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis | 2 species | 10x 3' v2 | lung | | 109,269 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. | Homo sapiens | 4 library construction methods | 8 anatomical entities | | 106,792 |
| Discriminating mild from critical COVID-19 by innate and adaptive immune single-cell profiling of bronchoalveolar lavages | Homo sapiens | 10x 5' v2 | lung | | 65,166 |
| Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium | Homo sapiens | 3 library construction methods | trachea | | 42,224 |
| Duong_lungMAP_unpubl | -- | 10X 3' v3 | -- | | 53,904 |
| Expansion of profibrotic monocyte-derived alveolar macrophages in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19 | -- | 2 library construction methods | -- | | 45,557 |
| Human distal lung maps and lineage hierarchies reveal a bipotent progenitor | Homo sapiens | 2 library construction methods | lung | | 21,700 |
| Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers | Homo sapiens | Drop-seq | lung | | 41,888 |
| Local and systemic responses to SARS-CoV-2 infection in children and adults | Homo sapiens | 2 library construction methods | 3 anatomical entities | | 659,217 |
| Lung transplantation for patients with severe COVID-19 | Homo sapiens | 10x 3' v3 | lung | | 91,980 |
| Phenotype molding of stromal cells in the lung tumor microenvironment | Homo sapiens | 2 library construction methods | lung | | 92,948 |
| Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis | Homo sapiens | 2 library construction methods | lung | normal interstitial lung disease 2 | 47,771 |
| Regenerative lineages and immune-mediated pruning in lung cancer metastasis | Homo sapiens | 2 library construction methods | 5 anatomical entities | | 49,253 |
| SARS‐CoV‐2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells | Homo sapiens | 10x 3' v2 | lung | normal lung adenocarcinoma | 57,299 |
| Schiller_2021 | -- | 10X 3' v3 | -- | Cancer (non-cancerous tissue used for samples) | 35,984 |
| Schultze_unpubl | -- | Seq-Well | -- | Cancer (non-cancerous tissue used for samples) | 8,016 |
| scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation | Homo sapiens | 3 library construction methods | 3 anatomical entities | | 199,845 |
| Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease | Homo sapiens | 4 library construction methods | lung | | 56,196 |
| Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 | Homo sapiens | 4 library construction methods | lung | | 37,820 |
| Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes | Homo sapiens | 2 library construction methods | lung | | 137,480 |
| Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis | Homo sapiens | 2 library construction methods | lung | | 114,396 |
| Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis | Homo sapiens | 10x 3' v2 | lung | | 312,928 |
| Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell | Homo sapiens | 3 library construction methods | 3 anatomical entities | | 21,964 |
| Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis. | 2 species | 10x 3' v2 | lung | | 76,070 |
| Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease | Homo sapiens | 10x 3' v2 | 4 anatomical entities | | 50,000 |
| Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition | Homo sapiens | 3 library construction methods | lung | | Unspecified |
