integrated Human Breast Cell Atlas (iHBCA) v1
Source datasets are AnnData (.h5ad) files that conform to the HCA metadata schema and were used to construct the atlas's integrated objects.
| File Name / Study | Assay | Tissue | Disease | Cell Count | Primary Data (fastqs) | Explore | Download |
|---|---|---|---|---|---|---|---|
ihbca-v1-gray-2022-r1.h5ad | 10x 3' v2 | breast | normal | 52,681 | HCA Explorer (opens in a new tab) | ||
ihbca-v1-kumar-2023-r1.h5ad | 2 assays | breast | normal | 714,331 | HCA Explorer (opens in a new tab) | ||
ihbca-v1-murrow-2022-r1.h5ad | 10x 3' v3 | breast | normal | 86,136 | HCA Explorer (opens in a new tab) | ||
ihbca-v1-nee-2023-r1.h5ad | 10x 3' v2 | breast | normal | 230,100 | HCA Explorer (opens in a new tab) | ||
ihbca-v1-pal-2021-r1.h5ad | 10x 3' v2 | breast | normal | 131,288 | HCA Explorer (opens in a new tab) | ||
ihbca-v1-reed-2024-r1.h5ad | 10x 3' v3 | breast | normal | 803,283 | |||
ihbca-v1-twigger-2022-r1.h5ad | 2 assays | breast | normal | 110,744 | HCA Explorer (opens in a new tab) |
