HCA Data Explorer

Single Cell RNA-Seq profiling of human embryonic kidney outer and inner cortical cells and kidney organoid cells

Updated January 23, 2023

To study the developmental process of human podocytes and compare to the in vitro counterpart, we dissociated cells from the inner and outer kidney cortex as well as kidney organoids, and performed 10X Genomics single-cell RNA sequencing.

Andrew P McMahonUniversity of Southern Californiaamcmahon@med.usc.edu
Andrew P McMahon (Experimental Scientist)1
1University of Southern California
Teresa Marquez

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/dd7f2436-0c56-4709-bd17-e526bba4cc15

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124472/suppl/GSE124472_RAW.tar
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

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Analysis Portals

None

Project Label

HumanDevoKidneyAndOrganoids

Species

Homo sapiens

Sample Type

2 sample types

Anatomical Entity

2 anatomical entities

Organ Part

3 organ parts

Selected Cell Types

kidney cell

Model Organ

kidney

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

2 development stages

Library Construction Method

10x 3' v2

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

Unspecified

Donor Count

3
fastq.gz58 file(s)tar.gz8 file(s)xlsx1 file(s)