HCA Data Explorer

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.

Updated July 19, 2022

Single-cell RNA sequencing of cerebrospinal fluid and PBMCs from Multiple sclerosis patients.

Nir YosefUniversity of Californianiryosef@berkeley.edu
David Schafflick1
Chenling A Xu2
Maike Hartlehnert1
Michael Cole2
Andreas Schulte-Mecklenbeck1
Tobias Lautwein1
Jolien Wolbert1
Michael Heming1
Sven G Meuth1
Tanja Kuhlmann1
Catharina C Gross1
Heinz Wiendl1
Nir Yosef2
Gerd Meyer Zu Horste1
1University Hospital Münster
2University of California
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/d3ac7c1b-5302-4804-b611-dad9f89c049d
None
INSDC Project Accessions:
SRP223886, SRP235677
GEO Series Accessions:
GSE138266, GSE141797
INSDC Study Accessions:
PRJNA575241

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

None

Project Label

SingleCellsMultipleSclerosis

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

2 anatomical entities

Organ Part

cerebrospinal fluid

Selected Cell Types

T follicular helper cell

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

2 nucleic acid sources

Paired End

false

Analysis Protocol

alignment_and_transcript_counting_bulk_FPKM, alignment_and_transcript_counting_bulk_RSEM, alignment_and_transcript_counting_singlecells

File Format

3 file formats

Cell Count Estimate

65.3k

Donor Count

30
csv.gz6 file(s)tar1 file(s)txt.gz4 file(s)