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The effect of Mtb aggregation on monocyte-derived macrophage transcription profiles

Updated January 23, 2023

Mycobacterium tuberculosis (Mtb) bacilli readily aggregate. We previously reported that Mtb aggregates lead to phagocyte death and subsequent efficient replication in the dead infected cells. Here we examined the transcriptional response of human monocyte derived macrophages to phagocytosis of aggregated Mtb relative to phagocytosis of non-aggregated single or multiple bacilli. Infection with aggregated Mtb led to an early upregulation of pro-inflammatory associated genes and enhanced TNF-alpha signaling via the NFkappaB pathway. These pathways were significantly more highly upregulated relative to infection with single or multiple non-aggregated bacilli per cell. Overall design: We infected monocyte derived macrophages with single, multiple non-aggregated and multiple aggregated Mtb bacilli (3 repeats for each of 4 infection conditions from 5 donors). Total number of samples = 60, including 15 uninfected controls.

Alex SigalAfrica Health Research Institutealex.sigal@ahri.org
Alex Sigal (Principal Investigator)1
1Africa Health Research Institute
Tiana Pereira

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/b9484e4e-dc40-4e38-9b85-4cecf5b8c068
None
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Analysis Portals

None

Project Label

mtbAggregation

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

macrophage

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

Smart-like

Nucleic Acid Source

single cell

Paired End

true

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

600.0k

Donor Count

5
fastq.gz120 file(s)txt.gz2 file(s)xlsx1 file(s)