HCA Data Explorer

Single cell transcriptional profiling of peripheral blood mononuclear cells (PBMCs) from mice flown on Rodent Research Reference Mission-2 (RRRM-2)

Updated January 10, 2024

In the Rodent Research Reference Mission (RRRM-2), forty female C57BL/6NTac mice were flown on the International Space Station. To assess differences in outcomes due to age, twenty 12 week-old and twenty 29 week-old mice were flown, respectively. To directly assess spaceflight effects, half of the young and old mice (10 old, 10 young) were sacrificed on-orbit after 55-58 days (ISS Terminal, ISS-T), while the other half (10 old, 10 young) were returned live to Earth after 32 days and allowed to recover for 24 days (Live Animal Return, LAR) before sacrifice. ISS-T and LAR mice were the same age at sacrifice. Both the ISS-T and LAR animals had independent ground controls (10 mice per group housed in flight hardware in matched environmental conditions), basal controls (10 mice per group sacrificed 2 days before launch), and vivarium controls (10 mice per group housed within standard vivarium habitats). Thus RRRM-2 included a total of 160 mice This study includes single cell transcriptional profiling data from peripheral blood mononuclear cells (PBMCs) from 4 young LAR flight animals, 4 old LAR flight animals, 4 young LAR ground control animals, and 4 old LAR ground control animals.

Jonathan M GalazkaNASAjonathan.m.galazka@nasa.gov
Jonathan M Galazka (Principal Investigator)1
Cassie Juran (Principal Investigator)1
Egle Cekanaviciute (Principal Investigator)1
Amanda M Saravia-Butler (Experimental Scientist)1
Valery Boyko (Experimental Scientist)1
Cassie Juran (Experimental Scientist)1
Louis Stodieck (Project Administration Role)2
Michael Roberts (Project Administration Role)3
Sylvain V Costes (Project Administration Role)1
Samrawit G Gebre (Project Administration Role)1
Virginia Ferguson (Project Administration Role)4
1NASA
2BioServe Space Technologies
3ISS National Lab
4University of Colorado
San-Huei Lai Polo
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/a2a2f324-cf24-409e-a859-deaee871269c

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-404/
None

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

None

Project Label

NasaSpaceMicePbmc

Species

Mus musculus

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

peripheral blood mononuclear cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

mouse postnatal

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

80.0k

Donor Count

16
fastq.gz32 file(s)xlsx1 file(s)zip1 file(s)