HCA Data Explorer

Human photoreceptor cells from different macular subregions have distinct transcriptional profiles

Updated May 12, 2022

mRNA profiles for thousands of cells from foveal and parafoveal retina were generated from four human donor eyes (single-cell donors 5-8) using 10X Genomics Chromium single-cell system followed by sequencing on an Illumina NovaSeq.

Robert F Mullinsrobert-mullins@uiowa.edurobert-mullins@uiowa.edu
Robert F Mullins (Principal Investigator)1
1robert-mullins@uiowa.edu
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/8bd2e5f6-9453-4b9b-9c56-59e3a40dc87e
None
INSDC Project Accessions:
SRP310949
GEO Series Accessions:
GSE169047
INSDC Study Accessions:
PRJNA714963

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Analysis Portals

None

Project Label

photoreceptorMacularSubregions

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

retina

Organ Part

2 organ parts

Selected Cell Types

photoreceptor cell

Disease Status (Specimen)

normal

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

10x 3' v1

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

2 file formats

Cell Count Estimate

34.5k

Donor Count

4
csv.gz16 file(s)fastq.gz128 file(s)