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Single cell RNAseq analysis of the developmental trajectory of iPSC-derived tenocytes

Updated January 20, 2022

Self-renewal of tendons is rare since the vascular formation inside is extremely poor, thus reconstructive surgery using autologous tendons has been often taken place in the case of severe injury. However, the rate of re-injury after surgery is relatively high, and collection of autologous tendons leads muscle weakness which results in prolonged rehabilitation. Here, we introduce the induced pluripotent stem cells (iPSCs)-based technology aiming at developing a new therapeutic option after tendon injury. We derived tenocytes from human iPSCs by recapitulating the normal progression of step-wise narrowing fate decisions in the vertebrate embryo. We used single-cell RNA sequencing to analyze the developmental trajectory of iPSCs-derived tenocytes. Overall design: Single cell rnaseq analysis of the developmental trajectory of iPSC-derived tenocytes

Makoto IkeyaKyoto Universitymikeya@cira.kyoto-u.ac.jp
Taiki Nakajima1
Naoki Yamada1
Keiko Yoshizawa1
Chengzhu Zhao1
Akihiro Nakahata1
Hiroshi Kuroki1
Tomoaki M Kato2
Mio Iwasaki1
Makoto Ikeya (Experimental Scientist)1
1Kyoto University
2CiRA Foundation
Parisa Nejad
Schwartz Rachel

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/78d7805b-fdc8-472b-8058-d92cf886f7a4
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

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Analysis Portals

None

Project Label

iPSCderivedTenocyte

Species

Homo sapiens

Sample Type

2 sample types

Anatomical Entity

2 anatomical entities

Organ Part

2 organ parts

Selected Cell Types

2 cell types

Model Organ

tendon

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

Unspecified

Donor Count

2
fastq.gz27 file(s)mtx.gz9 file(s)tsv.gz18 file(s)