HCA Data Explorer

Marked regional glial heterogeneity in the human white matter of the central nervous system

Updated October 10, 2023

The myelinated white matter tracts of the central nervous system (CNS) are essential for fast transmission of electrical impulses and are commonly affected in neurodegenerative diseases. However, these often uniquely human diseases differentially affect white matter regions, at various ages and between males and females, and we hypothesised that this is secondary to physiological variation in white matter glia with region, age and sex. Using single nucleus RNA sequencing of healthy human post-mortem samples, we find marked glial heterogeneity with tissue region (primary motor cortex, cerebellum, cervical spinal cord), with tissue-specific cell populations of oligodendrocyte precursor cells and astrocytes, and a spinal cord-enriched oligodendrocyte type that appears human-specific. Spinal cord microglia but not astrocytes show a more activated phenotype compared to brain. These regional effects, with additional differentially expressed genes with age and sex in all glial lineages, help explain pathological patterns of disease – essential knowledge for therapeutic strategies.

Anna WilliamsUniversity of Edinburghanna.williams@ed.ac.uk
Luise Seeker1
Nadine Bestard-Cuche1
Sarah Jäkel1
Nina-Lydia Kazakou1
Sunniva Bøstrand1
Alastair Kilpatrick1
David Van Bruggen2
Mukund Kabbe2
Fabio Baldivia Pohl2
Zahra Moslehi3
Neil Henderson1
Catalina Vallejos1
Gioele La Manno4
Gonçalo Castelo-Branco2
Anna Williams1
1University of Edinburgh
2Karolinska Institutet
3École Polytechnique Fédérale de Lausanne
4Ecole Polytechnique Federale de Lausanne
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To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/73011a86-4755-48ac-9f70-a28903b4ad77

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://cellxgene.cziscience.com/collections/9d63fcf1-5ca0-4006-8d8f-872f3327dbe92.https://gitfront.io/r/user-1167685/QNF6fMTSbeE6/Luise-Seeker-Human-WM-Glia/3.https://seeker-science.shinyapps.io/shiny_app_multi/
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Analysis Portals

CZ CELLxGENECZ CELLxGENE

Project Label

Markedregionalglialheterogeneityinthehumanwhitemat

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

3 anatomical entities

Organ Part

3 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

Unspecified

Disease Status (Donor)

Unspecified

Development Stage

13 development stages

Library Construction Method

10x 3' v3

Nucleic Acid Source

single nucleus

Paired End

false

File Format

fastq

Cell Count Estimate

66.4k

Donor Count

20
fastq288 file(s)