HCA Data Explorer

The single cell atlas of human endometrial stromal cells

Updated January 11, 2023

Primary human endometrial stromal cells (HESCs) from three patients and the Telomerase-immortalized endometrial stromal cell line (THESC) were cultured in the cluture medium and collected for scRNA-Seq. 13 distinct cell clusters were identified among all the cells, which not only reflect the differences between the four samples, but also the heterogeneity within each sample divided into mature, proliferative and active fibroblast. The conserved transcriptomic changes from the three primary HESC were observed in comparison to the THESCs. Cell clustering with batch correction further indicate that the intrinsic cellular distribution were similar among all the primary HESCs and THESCs. These intrinsic cell clustering showed varaiable stages of cell cycle and a cell development lineage between proliferative and mature or active fibroblast. Overall design: Primary human endometrial stromal cells (HESCs) from three patients and the Telomerase-immortalized endometrial stromal cell line (THESC) were cultured in the culture medium and collected for scRNA-Seq.

Franco J DemayoNational Institute of Environmental Health Sciencesfrancesco.demayo@nih.gov
Franco J Demayo (Principal Investigator)1
Rong Li1
Tian-yuan Wang1
Elinor Shelp-Peck1
San-Pin Wu1
1National Institute of Environmental Health Sciences
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/6e60a555-fd95-4aa2-8e29-3ec2ef01a580
None
GEO Series Accessions:INSDC Project Accessions:INSDC Study Accessions:

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Analysis Portals

None

Project Label

atlasOfHumanEndometrialStromalCells

Species

Homo sapiens

Sample Type

2 sample types

Anatomical Entity

uterus

Organ Part

endometrium

Selected Cell Types

2 cell types

Model Organ

endometrium

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

7.8k

Donor Count

4
fastq.gz12 file(s)tar1 file(s)xlsx1 file(s)