HCA Data Explorer

Intrarenal Single-Cell Sequencing of Hepatitis B Virus Associated Membranous Nephropathy.

Updated April 21, 2023

To date, the pathogenesis of hepatitis B virus (HBV)-associated membranous nephropathy (MN) remains elusive. This study aimed to decipher the etiopathogenesis of HBV-associated MN by performing single-cell RNA sequencing (scRNA-seq) of kidney biopsy specimens from a patient with HBV-associated MN and two healthy individuals. We generated 4,114 intrarenal single-cell transcriptomes from the HBV-associated MN patient by scRNA-seq. Compared to healthy individuals, podocytes in the HBV-associated MN patient showed an increased expression of extracellular matrix formation-related genes, including HSPA5, CTGF, and EDIL3. Kidney endothelial cells (ECs) in the HBV-associated MN were enriched in inflammatory pathways, including NF-kappa B signaling, IL-17 signaling, TNF signaling and NOD-like receptor signaling. Gene ontology (GO) functional enrichment analysis and Gene Set Variation Analysis (GSVA) further revealed that differentially expressed genes (DEGs) of ECs from the HBV-associated MN patients were enriched in apoptotic signaling pathway, response to cytokine and leukocyte cell-cell adhesion. The up-regulated DEGs in glomerular ECs of HBV-associated MN patients were involved in biological processes such as viral gene expression, and protein targeting to endoplasmic reticulum. We further verified that the overexpressed genes in ECs from HBV-associated MN were mainly enriched in regulation of protein targeting to endoplasmic reticulum, exocytosis, viral gene expression, IL-6 and IL-1 secretion when compared with anti-phospholipase A2 receptor (PLA2R)-positive idiopathic membranous nephropathy (IMN). The receptor-ligand crosstalk analysis revealed potential interactions between endothelial cells and other cells in HBV-associated-MN. These results offer new insight into the pathogenesis of HBV-associated MN and may identify new therapeutic targets for HBV-associated MN.

Xiangcheng XiaoDepartment of Nephrology, Xiangya Hospital, Central South University, Changsha.1376785378@qq.com
Yong ZhongDepartment of Nephrology, Xiangya Hospital, Central South University, Changsha.zhongyong121@163.com
Leilin Yu1
Wei Lin2
Chanjuan Shen3
Ting Meng1
Peng Jin4
Xiang Ding5
Peter J Eggenhuizen6
Joshua D Ooi1
Rong Tang1
Wannian Nie1
Xia Li1
Xiangcheng Xiao1
Yong Zhong1
1Department of Nephrology, Xiangya Hospital, Central South University, Changsha.
2Department of Pathology, Xiangya Hospital, Central South University, Changsha.
3Department of Hematology, The Affiliated Zhuzhou Hospital Xiangya Medical College, Central South University, Changsha.
4Department of Organ Transplantation, Xiangya Hospital, Central South University, Changsha.
5Department of Organ Transplantation, Xiangya Hospital, Central South University, Changsha, China.
6Centre for Inflammatory Diseases, Monash University, Clayton, VIC.
Wei Kheng Teh

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/5f44a860-d96e-4a99-b67e-24e1b8ccfd26
None
GEO Series Accessions:

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

None

Project Label

Xiao-Human-RNAscope

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

kidney

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

GEXSCOPE technology

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

3 file formats

Cell Count Estimate

15.6k

Donor Count

1
fastq.gz2 file(s)gz1 file(s)xlsx1 file(s)