HCA Data Explorer

Single Cell Multiome Atlas of the Human Fetal Retina

Updated March 20, 2024

As the light-sensing part of the visual system, the retina is comprised of five classes of neurons, including photoreceptors, horizontal, amacrine, bipolar, and retinal ganglion cells, along with several non-neuronal cell types such as Muller glia. These major cell classes can be further classified into hundreds of distinct cell subtypes. The development of the retina is under tight temporal control where multipotent progenitor cells differentiate into specific mature cell types in a sequential, but overlapping, order. Additionally, the developmental process is under tight spatial control, with cells at the central retina developing earlier than cells at the periphery. To provide a comprehensive view of the human fetal retina at the molecular level and investigate transcriptional regulatory mechanisms controlling the differentiation process, we profiled more than 300,000 single nuclei of the human fetal retina from 12 donors spanning post conception week 10 and 23 with Multiome RNA-seq and ATAC-seq.

Rui ChenBaylor College of Medicineruichen@bcm.edu
None
Zhen Zuo1
Xuesen Cheng (Experimental Scientist)1
Salma Ferdous1
Jianming Shao1
Jin Li1
Jiaxiong Lu1
Antonio Lopez2
Juliette Wohlschlegel3
Aric Prieve3
Mervyn Thomass4
Thomas Reh3
Yumei Li (Experimental Scientist)1
Ala Moshiri2
Yourong Bao1
Jean Li1
Rui Chen (Principal Investigator)1
1Baylor College of Medicine
2University of California, Davis
3University of Washington
4The University of Leicester
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/581de139-461f-4875-b408-56453a9082c7

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://cellxgene.cziscience.com/collections/5900dda8-2dc3-4770-b604-084eac1c2c822.https://explore.data.humancellatlas.org/projects/581de139-461f-4875-b408-56453a9082c7
None

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

CZ CELLxGENECZ CELLxGENE

Project Label

SingleCellMultiomeAtlasoftheHumanFetalRetina

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

eye

Organ Part

2 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

Unspecified

Disease Status (Donor)

Unspecified

Development Stage

9 development stages

Library Construction Method

2 library construction methods

Nucleic Acid Source

single nucleus

Paired End

false

File Format

fastq

Cell Count Estimate

592.3k

Donor Count

12
fastq2,180 file(s)