HCA Data Explorer

Molecular Architecture of the Mouse Nervous System.

Updated July 19, 2022

The authors used RNA sequencing of half a million single cells to create a detailed census of cell types in the mouse nervous system.

Sten LinnarssonKarolinska Institutesten.linnarsson@ki.se
Amit Zeisel1
Hannah Hochgerner1
Peter Lönnerberg1
Anna Johnsson1
Fatima Memic1
Job van der Zwan1
Martin Häring1
Emelie Braun1
Lars E Borm1
Gioele La Manno1
Simone Codeluppi1
Alessandro Furlan1
Kawai Lee1
Nathan Skene1
Kenneth D Harris2
Jens Hjerling-Leffler1
Ernest Arenas1
Patrik Ernfors1
Ulrika Marklund1
Sten Linnarsson1
1Karolinska Institute
2UCL Institute of Neurology
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/2c041c26-f75a-495f-ab36-a076f89d422a
None
INSDC Project Accessions:
SRP135960
INSDC Study Accessions:
PRJNA438862

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

None

Project Label

MouseNervousSystem

Species

Mus musculus

Sample Type

specimens

Anatomical Entity

brain

Organ Part

16 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

Theiler stage 28

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol

File Format

2 file formats

Cell Count Estimate

Unspecified

Donor Count

32
fastq.gz376 file(s)loom1 file(s)