HCA Data Explorer

A single-cell survey of the human first-trimester placenta and decidua

Updated July 19, 2023

The placenta and decidua interact dynamically to enable embryonic and fetal development. Here, we report single-cell RNA sequencing of 14,341 and 6754 cells from first-trimester human placental villous and decidual tissues, respectively. Bioinformatic analysis identified major cell types, many known and some subtypes previously unknown in placental villi and decidual context. Further detailed analysis revealed proliferating subpopulations, enrichment of cell type–specific transcription factors, and putative intercellular communication in the fetomaternal microenvironment. This study provides a blueprint to further the understanding of the roles of these cells in the placenta and decidua for maintenance of early gestation as well as pathogenesis in pregnancy-related disorders.

Thomas TuschlThe Rockefeller Universityttuschl@rockefeller.edu
Zev WilliamsColumbia University Medical Centerzw2421@cumc.columbia.edu
Hemant Suryawanshi1
Pavel Morozov1
Alexander Straus2
Nicole Sahasrabudhe3
Klaas EA Max1
Aitor Garzia1
Manjunath Kustagi1
Thomas Tuschl1
Zev Williams2
1The Rockefeller University
2Columbia University Medical Center
3Albert Einstein College of Medicine
Mallory Ann Freeberg

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/1cd1f41f-f81a-486b-a05b-66ec60f81dcf
None
INSDC Project Accessions:INSDC Study Accessions:

Downloaded and exported data is governed by the HCA Data Release Policy and licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For more information please see our Data Use Agreement.

Analysis Portals

UCSC Cell BrowserUCSC Cell Browser

Project Label

HumanFirstTrimesterPlacentaDecidua

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

placenta

Organ Part

2 organ parts

Selected Cell Types

Unspecified

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

3 development stages

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

22.5k

Donor Count

11
bam3 file(s)fastq.gz28 file(s)loom4 file(s)xlsx1 file(s)