HCA Data Explorer

Single-cell transcriptomics provides insights into hypertrophic cardiomyopathy

Updated November 17, 2023

Hypertrophic cardiomyopathy (HCM) is a genetic heart disease that is characterized by unexplained segmental hypertrophy that is usually most pronounced in the septum. While sarcomeric gene mutations are often the genetic basis for HCM, the mechanistic origin for the heterogeneous remodeling remains largely unknown. A better understanding of the gene networks driving the cardiomyocyte (CM) hypertrophy is required to improve therapeutic strategies. Patients suffering from HCM often receive a septal myectomy surgery to relieve outflow tract obstruction due to hypertrophy. Using single-cell RNA sequencing (scRNA-seq) on septal myectomy samples from patients with HCM, we identify functional links between genes, transcription factors, and cell size relevant for HCM. The data show the utility of using scRNA-seq on the human hypertrophic heart, highlight CM heterogeneity, and provide a wealth of insights into molecular events involved in HCM that can eventually contribute to the development of enhanced therapies.

Eva van RooijHubrecht Institutee.vanrooij@hubrecht.eu
Martijn Wehrens1
Anne E de Leeuw1
Maya Wright-Clark1
Joep EC Eding1
Cornelis J Boogerd1
Bas Molenaar1
Petra H van der Kraak2
Diederik WD Kuster3
Jolanda van der Velden3
Michelle Michels4
Aryan Vink2
Eva van Rooij (Principal Investigator)1
1Hubrecht Institute
2University Medical Center Utrecht
3Amsterdam UMC
4Erasmus MC
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.org/projects/10a845f7-0361-46fa-92a3-2a36483136b1

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://zenodo.org/records/6282659
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

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Analysis Portals

None

Project Label

WehrensHypertrophicCELSeq2

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

heart

Organ Part

left ventricle myocardium

Selected Cell Types

Unspecified

Disease Status (Specimen)

hypertrophic cardiomyopathy

Disease Status (Donor)

hypertrophic cardiomyopathy

Development Stage

human adult stage

Library Construction Method

CEL-seq2

Nucleic Acid Source

single cell

Paired End

true

Analysis Protocol

barcode_matrix_generation, raw_read_matrix_generation, transcript_matrix_generation

File Format

4 file formats

Cell Count Estimate

2.3k

Donor Count

5
csv.gz4 file(s)fastq.gz106 file(s)tsv.gz48 file(s)xlsx1 file(s)