Analysis Tools Registry

UCSC Cell Browser

Max Haeussler

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UCSC Cell Browser is a software tool for single cell RNA expression, a 2D viewer that shows cells as a dimensionality reduction plot with the expression data overlaid. The viewer allows a visual comparison of large single-cell datasets in 2D, overlaying metadata, marker gene levels and cell clustering information. This is useful when comparing single cell layout (dimensionality reduction) methods and batch correction methods.

UCSC Cell Browser

Contact

Max Haeussler (max@soe.ucsc.edu)

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